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Data associated with: A wealth of riches: a comprehensive revision of diamond frogs, genus Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae), with the description of seven new species

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Zenodo2025-10-03 更新2026-05-26 收录
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Supplementary files associated with the publication 'A wealth of riches: a comprehensive revision of diamond frogs, genus Rhombophryne Boettger, 1880 (Microhylidae, Cophylinae), with the description of seven new species'. Contains: Rhombophryne-Mapping.csv - MS-DOS CSV file containing coordinates used for maps in the manuscript RhombophryneMorphometricsMasterTable.xlsx - Full morphometric and morphological dataset. Contains three sheets: Raw, with the full dataset; GapTreated, containing a reduced set of measurements, with all gaps removed; GapTreatedWithDiscreet, containing the same set as GapTreated, plus several discreet traits. The 'GapTreated' sheet was the one used for PCA and LDA in the manuscript. 16S_p-distance_Rhombophryne_2025-10-01.xlsx - Uncorrected p-distances in 16S rRNA for Rhombophryne specimens and species. Contains six sheets: S3_16S3_all_individuals, Supplementary Table 3 S4_16S5_all_inidivduals, Supplementary Table 4 S5_16S3_modern_individuals, Supplementary Table 5 S6_16S5_modern individuals, Supplementary Table 6 16S3_species_modern, Table 2 16S5_species_modern, Table 3 Rhombo_16S5.fas - Full 16S5' alignment in FASTA format Rhombo_16S3.fas - Full 16S3' alignment in FASTA format config.txt - config file for MolD analysis. RAG1_partition.txt - partition file used as part of input for Hapsolutely to calculate haplotype network RAG1_Rhombophryne_HTNW.fas - Full Rag1 alignment in FASTA format used as input for Hapsolutely to calculate haplotype network 16S5_Rhombo_MolD.fas - input alignment used for MolD analysis for 16S5' 16S3_Rhombo_MolD.fas - input alignment used for MolD analysis for 16S3' 16S_Rhombophryne_concat.fas - FASTA alignment concatenated from 3' and 5' fragments. 16S5-Rhombophryne_Taxi2_speciesgroups.csv - Input file used for Taxi2 on 16S5' for species groups 16S3-Rhombophryne_Taxi2_speciesgroups.csv- Input file used for Taxi2 on 16S3' for species groups Rhombophryne_museomics.xlsx - Details on museomics results. Contains two sheets, one for either fragment of 16S.

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2025-10-03
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