Stacks Script

Dryad2018-01-01 更新2026-04-13 收录

RAD-seq数据分析

生物信息学脚本

数据链接：

https://datadryad.org/resource/doi:10.5061/dryad.f4g56/8 数据链接链接失效反馈

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资源简介：

Script (command line) used for running STACKS for data filtering and assembly. Flag settings and parameters vary based on filtering requirements and desired outputs.

创建时间：

2018-01-01

Illumina RAD-seq reads for 190 dwarf birch (Betula nana) individuals in 36 populations in Scotland and Finland

植物种群遗传学

RAD-seq数据分析

We extracted DNA from 190 dwarf birch (Betula nana) individuals from 36 populations in Scotland and Finland. We used the restriction enzyme PstI. Cut DNA was normalized and submitted to FLORAGENEX (Po

NIAID Data Ecosystem70

Vanessa cardui pedigree RAD-seq data for linkage map. Vanessa cardui pedigree

遗传连锁图谱构建

RAD-seq数据分析

The sample includes RAD-seq data from one Vanessa cardui female and 95 offspring, for construction of a linkage map. The DNA was extracted with a modified saltextraction method and digested with ecoR1

NIAID Data Ecosystem60

A reference-free approach to analyze RADseq data using standard Next Generation Sequencing toolkits

RAD-seq数据分析

无参考基因组分析

Data used to evaluate/validate RAD sequencing analyses pipelines in "A reference-free approach to analyze RADseq data using standard Next Generation Sequencing toolkits "

NIAID Data Ecosystem30

Alignment files and scripts

系统发育分析

生物信息学脚本

The alignment files generated by using SNPhylo for maize and rice phylogenetic analyses and custom scripts used in that study.

Figshare2022-01-10 更新60

Utilizing RADseq data for phylogenetic analysis of challenging taxonomic groups: a case-study in Carex sect. Racemosae

植物系统发育学

RAD-seq数据分析

PREMISE OF THE STUDY: Relationships among closely related and recently diverged taxa can be especially difficult to resolve. Here we use both Sanger sequencing and next-generation RADseq data sets to

DataONE2020-06-24 更新50

Stacks Script

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