Preprocessed TCGA RNA-seq and GEO microarray datasets (differentially expression results used in CLEAR method development)

We introduce Concise List Enrichment Analysis Reducing Redundancy (CLEAR), a Bayesian gene set enrichment framework that jointly models gene sets while incorporating continuous gene-level statistics such as test statistics or p-values. CLEAR was benchmarked using selected human TCGA RNA-seq datasets and GEO microarray datasets previously included in benchmarking compendia.