遇见数据集

Genotypes and Coordinates for Atrina vexillum in French Polynesia

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Zenodo2026-04-07 更新2026-05-26 收录
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This dataset contains multilocus microsatellite genotype data, geographic coordinates, and sampling metadata for 2,420 individuals of Atrina vexillum, a large Indo-Pacific fan mussel. Samples were collected in 2022 across six islands of the Society Archipelago in French Polynesia: Bora-Bora, Raiatea, Taha'a, Huahine, Moorea, and Tahiti. Field sampling was conducted using snorkeling, towed free diving, and SCUBA. Individuals were georeferenced and sampled non-lethally in shallow lagoon habitats (<20 m depth). DNA was extracted using QIAcube HT or Gentra Puregene kits (QIAGEN®), and genotyping was performed using 21 microsatellite markers (9 di-, 5 tri-, and 7 tetra-nucleotide loci), grouped into five multiplexes. Allele scoring was done with GENEMAPPER v5 (Applied Biosystems™) following capillary electrophoresis (ABI 3730xl, GenoScreen, France). Each row corresponds to a unique individual and includes: Sample ID Sampling island code (BO = Bora-Bora, HU = Huahine, RA = Raiatea, TA = Taha'a, MO = Moorea, TH = Tahiti) Latitude and Longitude in decimal degrees Two alleles per locus (formatted as Locus-A1, Locus-A2 for 21 loci) Missing allele calls are encoded as 0. This dataset supports the following publication:Guttierez T., Boissin E., Planes S. (submitted). Unexpected sharp genetic breaks in a marine bivalve reveal limited connectivity and question a potential vulnerability. Journal. Microsatellite marker sequences are available in GenBank under accession numbers PP586094-PP586098, PP586102, PP586104-PP586105, PP586108, PP586110, PP586112-PP586115, PP586117-PP586119, PP586121-PP586125, PP586128, PP586132-PP586133, PP586138-PP586139, PP586141-PP586143.

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Zenodo
创建时间:
2025-08-21
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