Additional file 1 of Higher genome variability within metabolism genes associates with recurrent Clostridium difficile infection

Additional file 1 Further data are available as Supplementary Tables: Table S1. COG categories prevalence in C. difficile core genome. Table S2. KEGG pathways present in core genome. Table S3. Logistic regression results for odds of infection recurrence after adjustment for ST. Table S4. Gene set enrichment analysis for results of logistic regression. Table S5. Log-likelihood ratio test results for comparison between M2a and M1a models. Table S6. Fisher’s exact test results for prevalence difference in prophage sequence between single and recurrent infections.