Additional file 8 of Chromatin loop anchors contain core structural components of the gene expression machinery in maize

Additional file 8. overlap analysis of Hi-C replicate 1 and 2 chromatin loop anchors against expressed genes and ATAC-Seq consensus peaks. See Additional File 6 for details. Features overlapping with loop anchors are listed and counted for each Hi-C replicate (“expressed gene”: gene with expression level above expected threshold “unexpressed gene”: gene with expression level below expected threshold; “overlapping peak”: open chromatin peak overlapping with expressed gene; “peak <2Kbps upstream”: open chromatin peak located <2Kbps upstream from expressed gene; “peak <2Kbps downstream”: open chromatin peak located <2Kbps downstream from expressed gene; “peaks >2Kbps”: open chromatin peak located >2Kbps from expressed gene).