Candidate mRNA Pseudouridine Sites Identified in Multiple Samples.

List of the 24 candidate mRNA pseudouridine sites from ψ-seq analysis of yeast RNA that were independently identified in multiple experiments from log phase and heat shock RNA samples. The table lists the yeast systematic name (Gene) and standard name (Name), whether the site occurs in the coding domain sequence (CDS) or 5′ (5-UTR) or 3′ untranslated regions (3-UTR), and the position of the site relative to the start of the ORF (nt). The pseudouridylation “score” computed for each site is shown for each of the three experiments analyzed (Log #1 = log-phase replicate #1, Log #2 = log-phase replicate #2, HS = heat shock), with bold and italicized scores depicting the sample from which each site was identified as a candidate mRNA pseudouridine.Candidate mRNA Pseudouridine Sites Identified in Multiple Samples.