Computational AlphaFold3 models of NapM monomer, dimers, and complexes with DNA and DivIVA from Mycobacterium smegmatis

This dataset contains computationally predicted structural models of the NapM protein and its potential complexes, generated using AlphaFold 3 (https://doi.org/10.1038/s41586-024-07487-w)All predictions were made through the official AlphaFold 3 web interface using default parameters.The purpose was to evaluate potential structural arrangements of NapM as a monomer, homodimer, and in complexes with dsDNA and DivIVA dimer.No manual modifications, molecular dynamics refinements, or energy minimizations were performed after prediction.---Dataset 1. AlphaFold3-predicted NapM monomer model (pLDDT and PAE scores; full data, text format)Dataset 2. AlphaFold3 summary confidence metrics for NapM monomer (ipTM and pTM values)Dataset 3. AlphaFold3-predicted NapM monomer 3D model (mmCIF format)Dataset 4. AlphaFold3-predicted NapM homodimer model (pLDDT and PAE scores; full data, text format)Dataset 5. AlphaFold3 summary confidence metrics for NapM homodimer (ipTM and pTM values)Dataset 6. AlphaFold3-predicted NapM homodimer 3D model (mmCIF format)Dataset 7. AlphaFold3-predicted NapM–dsDNA complex (pLDDT and PAE scores; full data, text format)Dataset 8. AlphaFold3 summary confidence metrics for NapM–dsDNA complex (ipTM and pTM values)Dataset 9. AlphaFold3-predicted NapM–dsDNA 3D model (mmCIF format)Dataset 10. AlphaFold3-predicted NapM–DivIVA complex (pLDDT and PAE map; summary confidences, text format)Dataset 11. AlphaFold3 summary confidence metrics for NapM–DivIVA complex (ipTM and pTM values)Dataset 12. AlphaFold3-predicted NapM–DivIVA 3D model (mmCIF format)