Supplemental Files — A genome-scale atlas reveals complex interplay of transcription and translation in an archaeon

Supplemental Files S1-S8. This is part of the supplemental material for the study entitled: "A genome-scale atlas reveals complex interplay of transcription and translation in an archaeon" by Alan P. R. Lorenzetti, Ulrike Kusebauch, Lívia S. Zaramela, Wei-Ju Wu, João P. P. de Almeida, Serdar Turkarslan, Adrián L. G. de Lomana, José V. Gomes-Filho, Ricardo Z. N. Vêncio, Robert L. Moritz, Tie Koide, and Nitin S. Baliga. File S1 | Atlas data. The non-redundant transcriptome locus tag dictionary, the normalized atlas data, and the non-normalized atlas data. File S2 | Differentially expressed genes in the absence of RNase_2099C. File S3 | Putative post-transcriptionally regulated genes (absolute abundance-based approach). Genes with patterns compatible with the post-transcriptional regulation hypothesis found by the abundance-based approach. File S4 | Gene set enrichment analysis and comparison of features. Comparison of quantitative variables and enrichment tests for putative post-transcriptionally regulated gene sets found by the absolute abundance- and by the relative abundance-based approaches. File S5 | Differential expression analysis of transcripts and proteins across the growth curve. File S6 | Putative post-transcriptionally regulated genes (relative abundance-based approach). Genes with patterns compatible with the post-transcriptional regulation hypothesis found by the relative abundance -based approach. File S7 | Atlas heatmap (expanded version). This file brings an expanded version of Figure 3. File S8 | Insertion sequence mobilization events detected by the long-read DNA-Seq experiment.