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<b>Impact of genome assemblies, genotyping methods, variant types, ploidy levels and population structures on genomic prediction in switchgrass</b>

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Genotype and phenotype data used in our manuscript. The original data are from: Evans, J., Crisovan, E., Barry, K., Daum, C., Jenkins, J., Kunde‐Ramamoorthy, G., Nandety, A., Ngan, C. Y., Vaillancourt, B., Wei, C., et al. (2015). Diversity and population structure of northern switchgrass as revealed through exome capture sequencing. Plant J. 84:800–815.Lipka, A. E., Lu, F., Cherney, J. H., Buckler, E. S., Casler, M. D., and Costich, D. E. (2014). Accelerating the Switchgrass (Panicum virgatum L.) Breeding Cycle Using Genomic Selection Approaches. PLoS ONE 9:e112227.Lu, F., Lipka, A. E., Glaubitz, J., Elshire, R., Cherney, J. H., Casler, M. D., Buckler, E. S., and Costich, D. E. (2013). Switchgrass Genomic Diversity, Ploidy, and Evolution: Novel Insights from a Network-Based SNP Discovery Protocol. PLoS Genet. 9:e1003215.

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2024-07-11
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