Additional file 4 of Assessing genomic diversity and signatures of selection in Jiaxian Red cattle using whole-genome sequencing data

Additional file 4: Table S1. Summary of sequencing data. Table S2. List of additional cattle samples for analysis of genetic background in Jiaxian Red cattle. Table S3. Distribution of SNPs identified in cattle breeds within various genomic regions annotated by ANNOVAR. Table S4. GO enrichment results for the genes containing specific nsSNPs > 5 in Jiaxian Red cattle. Table S5. GO enrichment results for the genes containing specific nsSNPs > 5 in Qinchuan cattle. Table S6. A summary of genes from θπ in Jiaxian Red. Table S7. A summary of genes from CLR in Jiaxian Red. Table S8. KEGG pathway analysis of Jiaxian Red candidate genes overlapped by θπ and CLR methods. Table S9. GO enrichment of Jiaxian Red candidate genes overlapped by θπ and CLR methods. Table S10. A summary of genes from FST. Table S11. A summary of genes from XP-CLR in Jiaxian Red cattle. Table S12. A summary of genes from FST and XP-EHH in Jiaxian Red cattle. Table S13. Cross-validation (CV) errors for ADMIXTURE ancestry models with K ranging from 2 to 8.