Data from: Sequential colonization of oceanic archipelagos led to a species-level radiation in the common chaffinch complex (Aves: Fringilla coelebs)

We include the vcf files used for the different analysis and a file with individuals information:

PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166

Complete dataset of 159,534 SNPs after initial filtering.
PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166_neutral01_LE05

Dataset of 100,166.166 neutral SNPs from 82 individuals in vcf format. Includes an individual of F.teydea as outgroup (TEN4).Used in RAxML analysis.

PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss075_count166_neutral01_LE05_noTEN4

Dataset of 100.166 neutral SNPs from 81 individuals (excluding the outgroup) in vcf format.
PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss095_count166_neutral01_LE05_2indv_outg_SNAPP.

Dataset of 15,836 neutral SNPs, including 19 individuals (2 per population + outgroup) used for SNAPP analysis.
PIN_CCHAZEFI_MAC_biall_dp460_q30_maf0018_hwe00001_miss095_count166_neutral01_LE05_STRUCTURE

Dataset of 16,416 independent neutral SNPs from 81 samples (no outgroup) in vcf format for STRUCTURE analysis.

MAC_indvs_vcfs
Information about the individuals included in the vcfs.