Manual organelle segmentations (crop238) in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of Interphase COS-7 cell (jrc_cos7-1b)

<b>This acquisition is part of the CellMap 2024 Segmentation Challenge</b><b>Challenge DOI:</b> https://doi.org/10.25378/janelia.c.7456966<b>Challenge Website:</b> https://cellmapchallenge.janelia.org/<b>Annotation description</b>: Dense segmentations of nucleus, mitochondria in jrc_cos7-1b using Amira 3D 2021.1, Classic Segmentation Workroom and the 'Using Amira to manually segment organelles in vEM for machine learning V.3' annotation protocol.<b>Annotation ID</b>: crop238<b>Primary Annotator</b>: Alyson Petruncio<b>Annotation protocol</b>: Using Amira to manually segment organelles in vEM for machine learning V.3 (http://dx.doi.org/10.17504/protocols.io.bp2l61rb5vqe/v3)<b>Software</b>: Amira 3D 2021.1, Classic Segmentation Workroom<b>Annotated voxel size (nm)</b>: 8 x 8 x 8 (x, y, z)<b>Annotated data dimensions (µm)</b>: 12.8 x 7.2 x 2.23 (x, y, z)<b>Annotated data offset (nm)</b>: 1603 x 803 x 3 (x, y, z)<b>Classes annotated</b>: nucleus, mitochondria<b>Dataset URL</b>: s3://janelia-cosem-datasets/jrc_cos7-1b/jrc_cos7-1b.zarr/recon-1/labels/groundtruth/crop238<b>Source (EM) dataset ID</b>: jrc_cos7-1b<b>Source (EM) voxel size (nm)</b>: 2 x 2 x 2 (x, y, z)<b>Source (EM) data dimensions (µm)</b>: 40.69 x 9.05 x 2.23 (x, y, z)<b>Source (EM) DOI</b>: https://doi.org/10.25378/janelia.24944601<b>Visualization website</b>: https://openorganelle.janelia.org/datasets/jrc_cos7-1b<b>Publication:</b> <i>CellMap Segmentation Challenge,</i> 2024.<b>The CellMap Project Team during this time consisted of:</b> David Ackerman, Davis Bennett, Marley Bryant, Hannah Nguyen, Grace Park, Alyson Petruncio, Alannah Post, Jacquelyn Price, Diana Ramirez, Jeff Rhoades, Rebecca Vorimo, Aubrey Weigel, Marwan Zouinkhi, Yurii Zubov.<b>The CellMap Project Team Steering Committee during this time consisted of:</b> Misha Ahrens, Christopher Beck, Teng-Leong Chew, Daniel Feliciano, Jan Funke, Harald Hess, Wyatt Korff, Jennifer Lippincott-Schwartz, Zhe J. Liu, Kayvon Pedram, Stephan Preibisch, Stephan Saalfeld, Ronald Vale, and Aubrey Weigel.