"Mapping information-rich genotype-phenotype landscapes with genome-scale Perturb-seq" Replogle et al. 2022 SRA and GEO file manifest

These tables list the raw fastq files (found on SRA under BioProject PRJNA831566 https://www.ncbi.nlm.nih.gov/bioproject/PRJNA831566) and associated BAM/MTX files for each lane/gemgroup of single-cell RNA-sequencing. In these manifest files, all FASTQ files associated with a single lane/gemgroup of 10X Genomics single-cell RNA-sequencing are listed in a single row. These files can be used as input for an aligner like celllranger count, starsolo, or kallisto-bustools. The "gemgroup" field indicates the integer value which is assigned to this gemgroup for aggregation of single-cell RNA-sequencing data in the finalized h5ad dataset.