Additional file 1 of Comparative genomic analyses provide new insights into evolutionary history and conservation genomics of gorillas

Additional file 1: Table S1. Resequenced gorilla genomes analysed in this study and allele balance of heterozygous sites after mapping. Table S2. D and f4-ratio statistics for each pairwise comparison of the gorilla genomes. Table S3. qpGraph statistics for the two models in figure 3A. Table S4. Dfoil results with different P1 populations. P2-P4 was the same in all analyses: P2 = Grauer's (G), P3 = cross river (CR), P4 = western lowland (WL). The consensus sequence of human/orang-utan/gibbon was used as outgroup. Table S5. Genes within low or high genomic diversity regions. Table S6. XP-EHH selection statistics for genes with a log P value above 5. Table S7. Genetic variants across all gorilla genomes per gene. Table S8. Gene ontoholgy enrichment of conserved genes among gorillas. Table S9. Genetic variants unique to each gorilla (sub)species and the SIFT annotations based on the human genome protein annotation. Table S10. Genes under selection and/or with unique protein sequences in each gorilla (sub)species.