TE.zip

<b>Repetitive elements</b><b> </b><b>predicted by</b><b> </b><b>RepeatMasker</b><b> </b><b>(version 4.1.7-p1)</b><b> for 25</b><b> </b><b>grassland plant species.</b><br><b>Species list:</b>Species_code Species_nameGerPra Geranium pratenseLeuVul Leucanthemum vulgare agg.TriFla Trisetum flavescensLotCor Lotus corniculatusCreBie Crepis biennisBelPer Bellis perennisDauCar Daucus carotaPruVul Prunella vulgarisTriPra Trifolium pratensePriVer Primula verisHolLan Holcus lanatusAloPra Alopecurus pratensisGalMol Galium mollugo agg.KnaArv Knautia arvensisMedVar Medicago x variaPlaLan Plantago lanceolataLuzCam Luzula campestrisVerCha Veronica chamaedrysArrEla Arrhenatherum elatiusTriDub Trifolium dubiumLatPra Lathyrus pratensisVicCra Vicia craccaRanAcr Ranunculus acrisPlaMed Plantago mediaAjuRep Ajuga reptans<br><b>Analyse pseudo code:</b>for i in {01..25}; do# the number corresponding to a particular speciesoutputDir="BMK230426-BJ202-01P000${i}"isoform="path/to/isoSeqData/BMK230426-BJ202-01P000${i}"path/to/RepeatMasker -pa 16 -lib Viridiplantae.fa -dir $outputDir $isoformdone;