Computational prediction of S-nitrosylation sites from experimentally identified S-nitrosylated proteins in plants using GPS-SNO 1.0, iSNO-PseAAC, iSNO-AAPair, and SNOSite software.
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Amino acid sequences were downloaded from the most recent version of the Arabidopsis information resource TAIR (TAIR10, www.arabidopsis.org) and subjected to the different programs for prediction of S-nitrosylation sites. NPR1, non-expresser of pathogenesis related genes 1; GAPDH, glyceraldehyde 3-phosphate dehydrogenase; SABP3, salicylic acid binding protein 3; TGA1, TGACG motif binding factor; cALD2, cytosolic fructose 1,6-bisphosphate aldolase; TIR1, transport inhibitor response 1; CDC48, cell division cycle 48; AtMYB30, Arabidopsis thaliana MYB transcription factor.C in bold, matched cysteine residues, "_" not predictedComputational prediction of S-nitrosylation sites from experimentally identified S-nitrosylated proteins in plants using GPS-SNO 1.0, iSNO-PseAAC, iSNO-AAPair, and SNOSite software.
