Annotation of Syngnathus typhle
收藏Figshare2020-07-17 更新2026-04-28 收录
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GeneMark-ESv2.3e was run onthegenomeassemblyandSNAPv20131129 onthegenesfoundby CEGMA.MAKERv2.31 usedthetrainedgenepredictors,aTrinity transcriptome assembly, all repeats in RepBase as called by MAKER and proteinsfromUniProtKB/SwissProtr2014_9 forafirstpass annotation ofthegenomeassembly.TheresultofthefirstpasswasusedtoretrainSNAP andtrainAUGUSTUSv3.0.2 andaseconditerationwasperformedusing the same set-up. The protein sequences from final output of MAKER were BLASTed against the UniProtKB/SwissProt proteins and InterProScan v5.4-47 was used to classify protein domains in the protein sequences. This informationwastransferredtoalloutputofMAKER.Thisannotated19,668gene models. InterProScan was run on thepredictedproteins of theseandgene nameswereallocatedbasedonmatchwithproteinsinUniProt/SwissProt.The files starting with Syngnathus_typhle is a more recent annotation done with Funannotate. The files starting with syty is the MAKER annotation
创建时间：
2020-07-17
