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Olmsted Thesis Chapter 3 Supplementary Tables

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Figshare2022-12-13 更新2026-04-28 收录
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SUPPLEMENTARY TABLE LEGENDS Supplementary Table 1. Metagenome assembled genome (MAG)-specific information. This dataset lists all MAGs for all included samples and to which MetaMAG each belongs. No MAGs were removed, even poor-quality ones, but CheckM completeness and contamination values are given. MetaMagRelAbund is the relative abundance of the listed MetaMAG based on read mapping of the given sample to all MetaMAGs while RelAbund is the relative abundance based on read mapping to MAGs derived from that sample. TotEET, RedEET, OxiEET, PutEET, MtrB are values generated by the FEET pipeline on every MAG, respectively total, reductive, oxidative, putative, and MtrB EET genes. MtrB is a porin that can be involved in either OxiEET or RedEET. The values to the right of these are for each listed MetaMAG, and are from on the METABOLIC pipeline with the added hidden Markov models for EET genes from the FEET pipeline, but these may not always be counted as an EET gene by FEET rules. Supplementary Table 2. Sample-specific information. Sample DNA was sequenced by cited efforts, RTSF Genomics Core at Michigan State University (MSU), or California Institute for Quantitative Biosciences (QB3). All data is available for open access at [insert something]. Supplementary Table 3. Electroactive chemical species in Trout Bog Lake. Data are averages from all available samples during 2016–2021.
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