Enhancer design manuscript data and models

This repository holds the trained DNA accessibility and enhancer activity models, and the data used to train and evaluate the model. <strong>Files for DNA accessibility models:</strong> <strong>Accessibility_models_training_data.tar.gz</strong> &lt;fold&gt;_sequences_&lt;set&gt;.fa FASTA files with DNA sequences of genomic regions from train/val/test sets. &lt;fold&gt;_sequences_activity_&lt;set&gt;.txt Files with accessibility scores for sequences from train/val/test sets. <strong>Accessibility_model_files.tar.gz</strong> model.h5 and model.json files for each Results_&lt;fold&gt;_&lt;tissue&gt;_DeepSTARR2_&lt;rep&gt; <strong>Accessibility_models_test_set_predictions.rds</strong> RDS object with predictions for accessibility <strong>Files for enhancer activity models:</strong> <strong>EnhancerActivity_model_files.tar.gz</strong> &lt;fold&gt;_sequences_&lt;set&gt;.fa FASTA files with DNA sequences of genomic regions from train/val/test sets. &lt;fold&gt;_sequences_activity_&lt;set&gt;.txt Files with enhancer activity labels for sequences from train/val/test sets. <strong>EnhancerActivity_model_files.tar.gz</strong> model.h5, model.json and Model_evaluation.pdf files for each Results_&lt;fold&gt;_&lt;tissue&gt;_&lt;rep&gt; <strong>EnhancerActivity_models_clean_evaluation_data.rds</strong> RDS object with sequences used for final evaluation of the models <strong>EnhancerActivity_models_results_per_tissue_test_set.rds</strong> RDS object with predictions and results of the enhancer activity models