Parameters of the top models produced on the basis of alignments with maximum 40% target sequence coverage and full interface coverage.

(1)First four symbols are the PDB code followed by ID of the chain as in the PDB file. Asterisk indicates that protein is a monomer in the PDB file.
(2)As provided in PDB file. Letters in parenthesis stand for higher levels of taxonomy classification (V: viruses; A: archaea; B: bacteria; F: fungi; P: plants; M: mammals).
(3)Extracted from PDB GO terms section.
(4)Logarithm of alignment expectation value (e-value).
(5)Entire target sequence coverage in the alignment of the model, as defined by equation (1).
(6)Coverage of the target binding domain (for multi-domain structures) in the alignment of the model.
(7)As defined by Eq. 3.
(8)As defined by Eq. 4.
(9)RMSD between Cα atoms of the interface residues in the model and the native structure.
For some targets the parameters of the model with the smallest interface RMSD are shown if the best and the top models have substantially different interface RMSD values (in bold).