Spatial transcriptomics in treatment-naive fibrosing interstitial lung diseases

This record contains AnnData objects of a Visium (10X Genomics) spatial transcriptomics dataset of treatment-naive fibrotic lung diseases. `adata_concat_312.h5ad`: `spaceranger count` (version 3.1.2) outputs concatenated without any filtering `adata_filtered_concat_312.h5ad`: same as above with filtering `adata_concat.h5ad`: `spaceranger count` (version 4.0.1) outputs concatenated without any filtering `adata_filtered_concat.h5ad`: same as above with filtering `adata_vis_assigned_cell_types_nfact12_assigned_factors_log_minmax.h5ad`: `adata_filtered_concat.h5ad` further processed. Annotated with cell type deconvolution, NMF factors/cellular niches, log-transformed, min-max normalized NMF weights, cellular niche assignment based on normalized NMF weights