DISTEMIST gazetteer

Please, cite use: Miranda-Escalada, A., Gascó, L., Lima-López, S., Farré-Maduell, E., Estrada, D., Nentidis, A., Krithara, A., Katsimpras, G., Paliouras, G., & Krallinger, M. (2022). Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources. Working Notes of Conference and Labs of the Evaluation (CLEF) Forum. CEUR Workshop Proceedings @article{miranda2022overview, title={Overview of DisTEMIST at BioASQ: Automatic detection and normalization of diseases from clinical texts: results, methods, evaluation and multilingual resources}, author={Miranda-Escalada, Antonio and Gascó, Luis and Lima-López, Salvador and Farré-Maduell, Eulàlia and Estrada, Darryl and Nentidis, Anastasios and Krithara, Anastasia and Katsimpras, Georgios and Paliouras, Georgios and Krallinger, Martin}, booktitle={Working Notes of Conference and Labs of the Evaluation (CLEF) Forum. CEUR Workshop Proceedings}, year={2022} } The DISTEMIST gazetteer contains main terms and synonyms from the relevant branches of Snomed-CT for the grounding of disease mentions. There are mentions belonging to Snomed-CT hierarchies such as disorder, finding, or morphological abnormality. The DISTEMIST Gazetteer is also used as an additional resource in the SocialDisNER task. Format Tab-separated file with the following columns: code: Snomed-CT ID language term: string mention semantic_tag: Snomed-CT hierarchy mainterm: binary field, indicating whether the term is a main term, or not DISTEMIST resources: Web DISTEMIST Gold Standard DISTEMIST annotation guidelines SocialDisNER resouress: Web SocialDisNER corpora For further information, please visit https://temu.bsc.es/livingner/ or email us at [e-mail]