The sequence and strength of identified KSHV splice sites.

The position and sequences of KSHV 5′ (A) and 3′ (B) splice sites (SS) of splice junction (JS) with ≥10 splice reads. The numbered splice junctions (SJ) are shown in Figs 3, 4 and 6 (see Tables 1 and 3 for more details). In green color are the numbered splice junctions with ≥10 reads identified only in the 57KO genome. The strength (colored gradient) of individual SS was determined by MAX:ENT model [32].