Supplementary Table S2: All Expression Quantification Heat Stress-related Data for <i>Oryza sativa </i>(including subspecies japnonica and indica)

Fasterq-dump from the NCBI SRA Toolkit (version 3.0.1), fastp (version 0.23.4), and Salmon (version 1.10.2) were used for FASTQ file retrieval, trimming, and expression quantification, respectively. For expression quantification by Salmon, the japonica sub-species transcript FASTA file, retrieved from Ensembl Plants release 58 (accessed 1 February 2024), was used as a reference transcript. Gene-level expression levels were summarized using the tximport Bioconductor package (release version 3.19) and calculated as scaled Transcripts Per Million (scaled TPM).