Code and data for: The evolution of ontogenetic decision-making in the wood of a clade of tropical plants

Code and data for reproducing the analysis from the manuscript \"The evolution of ontogenetic “decision-making” in the wood of a clade of tropical plants\". Data includes raw and curated data from cell lineages derived from wood progenitor cells. Python code is provided to generate virtual wood cell lineages using L-systems. It also provides code to determine number of words at different k-mer lengths and to estimate Shannon-Entropy and Lempel-Ziv values from the coded cell lineages. R code is provided to generate the plots and to adjust linear models of the maximum number of words based on total number of coded cells and mean cell lineage length., , R, python, # The evolution of ontogenetic *decision-making* in the wood of a clade of tropical plants.

## Description of the data and file structure

This repository contains the data and code used for reproducing the results and figures of the manuscript titled, \"The evolution of ontogenetic *decision-making* in the wood of a clade of tropical plants,\" by Emilio Petrone-Mendoza, Mariana Benítez, María Elena Lárraga, and Mark E. Olson (UNAM, Mexico).

The repository is divided in:

1. Data: Data that we generated from the wood cell lineages from *Pedilanthus* clade species of the genus *Euphorbia*.
* Raw_data/
* Cell_files_data
* words_count_all
* words_count_morethanone/
2. Figures: figures of the manuscript that we generated with scripts and data
3. meta: additional tables and information from the samples.
4. scripts: executables for the analysis of cell lineage data. Scripts are written in python and other in R.

##### Description of the Data folder.

* Data:
...