Monod supporting data

The release of the Monod package (https://github.com/pachterlab/monod) is accompanied by the analysis of several 10X datasets to identify trends in transcriptional regulation mechanisms and parameters. This data deposit contains the copy-number data as well as the results of the Monod inference pipeline. allen_cell_types.tar.gz: raw loom files generated by splitting four Allen brain datasets according to GABAergic and glutamatergic cell type-specific barcodes. gg_220602_022_allen_celltypes_1.tar.gz: search results and figures from fitting a model models to four Allen datasets, split by cell type and cell subtype. Please note that the gene lists (.csv), search data (.sd), search parameters (.pr), and search results (.res and _upd.res) are the versions of record. However, the preliminary figures in the directory analysis_figures/ are not; the analysis notebooks and figures of record are reported at https://github.com/pachterlab/monod_examples/tree/main/manuscript_computation.