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Supplemental_figures S1 - S7

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Supplemental Figure S1. Flow-chart showing steps in dodder transcriptome assembly and annotation, and downstream transcript clustering and differential expression analysis. Supplemental Figure S2. Transcript size distribution for Dodder_all_transcriptome. Supplemental Figure S3. Expression of non-annotated transcripts as detected by RT-PCR in dodder stems. Supplemental Figure S4. Pie charts for multilevel GO distribution of annotated transcripts in three categories: biological processes (A), cellular components (B) and molecular function (C). Supplemental Figure S5. Histogram representation of GOslim classification in three categories: biological processes (A), molecular function (B) and cellular components (C). Supplemental Figure S6. Distribution of transcripts annotated as enzymes among different enzyme classes. Supplemental Figure S7. Multidimensional scaling (MDS) plot of all replicates of each dodder tissue used for transcriptome assembly and, subsequently, transcript clustering and differential expression analysis.
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