Possibility to generate large RNA-Seq datasets has led to development of various reference-based and de novo transcriptome assemblers with their own strengths and limitations. While reference-based to
Assembly of Sycon ciliatum transcriptome. The transcriptome was assembled de-novo from Illumina HiSeq paired reads. A comprehensive set of sequencing libraries was used including different development
Six samples (three technical replicates from both types of growth media) of Sarocladium terricola (RCEF6201) were collected, total RNA was extracted and sequenced.
Fasta files of de novo assemblies of transcriptome of Pekin Duck Anas platyrhynchos domestica. See Moreton et al. Submitted Frontiers in Bioinformatics and Computational Biology 2014
The goals of this project were to generate a reference de novo transcriptome for the hemocytes of shrimp (Marsupenaeus japonicus) using long-read sequencing.
