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Glomerular voom-transformed RNAseq counts from the Neptune Cohort and healthy living donors [re-analysis of GSE197307]

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NIAID Data Ecosystem2026-05-02 收录
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https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE254957
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Glomerular Transcriptome in the Nephrotic Syndrome study network cohort Please note that GSE197307 samples were re-analyzed as described below. Glomerular RNAseq profiles; Raw data (fastq) files are available upon approved ancillary study request from the NEPTUNE consortium (please see https://www.neptune-study.org/ancillary-studies; email contact: NEPTUNE-STUDY@umich.edu *data processing step: fastqScreen 0.11.4 cutadapt 1.14 -m 50 -A CTGTCTCTTATA -a CTGTCTCTTATA STAR 2.5.2.a --bamRemoveDuplicatesType UniqueIdentical --twopassMode Basic --outFilterIntronMotifs RemoveNoncanonical --outSAMtype BAM SortedByCoordinate --outSAMstrandField intronMotif htseq-count --stranded=no --order=pos --mode=union genome build/assembly: GRCh 38.86 processed data files format and content: voom transformed data were batch corrected and trimmed to remove transcripts of no detectable abundance.
创建时间:
2024-11-04
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