Additional file 9 of MetaPro: a scalable and reproducible data processing and analysis pipeline for metatranscriptomic investigation of microbial communities

Additional file 9: Table S5.Comparisons of Enzyme annotations between MetaPro and HUMAnN3 for NOD mouse, kimchi, and human oral biofilm datasets. This table compares the ECs of MetaPro against HUMAnN3 on the NOD mouse, kimchi, and human oral biofilm datasets.  The HUMAnN3 ECs were filtered for EC co-occurrence pairs that were not found in Swiss-Prot, and multiple unique ECs that annotated to the same gene family.  The resulting HUMAnN3 ECs were contrasted against MetaPro’s EC, yielding a common set of ECs found in both tools, ECs found only by MetaPro, and ECs found only by HUMAnN3.  The same comparison is shown for MetaPro’s high-quality EC predictions.