Additional file 1 of Towards reliable whole genome sequencing for outbreak preparedness and response

Additional file 1: Figure S1. Overview of variants across the genomes before cleanup of read mapping. The x axis shows the variants found across the 4 genomes. The color scale represents the fraction of mapped reads containing the indicated variant in the read alignment. A darkgrey tile color indicates coverage below the coverage threshold (5x Illumina, 100x Nanopore). Figure S2. Overview of true variants across the genomes. The x axis shows the variants found across the 4 genomes. The color scale represents the fraction of mapped reads containing the indicated variant in the read alignment. A darkgrey tile color indicates coverage below the coverage threshold (5x Illumina, 100x Nanopore).