Additional file 2: Table S1. of Maternal variant in the upstream of FOXP3 gene on the X chromosome is associated with recurrent infertility in Japanese Black cattle

Detailed features among SNPs in QTL_2 and QTL_5 for infertility in repeat-breeding Japanese Black heifers that failed to conceive by ET Positions are based on the UMD3.1 assembly of the bovine genome. a QTL_No. are shown in Table 1. Table S2. Neighboring Ensembl genes in QTLs on the X chromosome associated with infertility in repeat-breeding Japanese Black heifers that failed to conceive by ET. Positions are based on the UMD3.1 assembly of the bovine genome. a QTL_No. are shown in Table 1. Table S3. PANTHER gene ontology analyses of genes in the QTLs. Positions are based on the UMD3.1 assembly of the bovine genome. a QTL_No. are shown in Table 1. Table S4. Cattle QTLdb hits within and near QTL_2 and QTL_5. Positions are based on the UMD3.1 assembly of the bovine genome. a QTL No. are shown in Table 1. b QTL_ID and Trait_ID were assigned using Cattle QTLdb. c PUBMED_ID were assigned using Cattle QTLdb. Table S5. The risk-haplotype in the QTL_2 for infertility in repeat-breeding Japanese Black heifers that failed to conceive by ET. Positions are based on the UMD3.1 assembly of the bovine genome. Table S6. Sequence ontology in QTL_2. a Sequence ontology was assigned to an allele by Ensembl variant effect predictor (VEP). Table S7. Detailed features of FOXP3 (ENSBTAT00000017660) transcript and the exon positions. Positions are based on the UMD3.1 assembly of the bovine genome. Table S8. Primer information for FOXP3 (ENSBTAT00000017660). Table S9. Detailed features of RUNX binding site in FOXP3 reporter construct (92375252–92,377,691 bp). Positions are based on the UMD3.1 assembly of the bovine genome. (XLSX 78 kb)