FFC: A Scalable FASTA Compressor - Datasets

This dataset contains the data used in the experiments reported in the paper "FFC: A Scalable FASTA Compressor" published in the Bioinformatics journal. It contains reference genomic, transcriptomic, viral, and protein sequence datasets. The sequences were obtained from public repositories such as the UCSC Genome Browser, NCBI, Ensembl Plants, UniProt, and FlyBase. Files included in the dataset: Triticum_aestivum.IWGSP1.22.dna.genome.fa.gz (1.51 GB) - Triticum aestivum genome assembly (IWGSP1.22) knownCanonical.exonNuc.fa.gz (82.96 MB) - Homo sapiens GRCh38 UCSC knownCanonical exon nucleotide sequences GRCh38.p14_genomic.fna.gz (1.11 GB) - Homo sapiens genome assembly GRCh38.p14 panTro3.fa.gz (1.03 GB) - Pan troglodytes genome assembly panTro3 cere.tar.gz (151.88 MB) - Saccharomyces cerevisiae genome assemblies influenza.fa.gz (291.88 MB) - Influenza virus genome collection uniprot_sprot.fa.gz (95.35 MB) - UniProtKB/Swiss-Prot reviewed protein sequences sars-cov-2_ncbi-620k.fa.gz (4.80 GB) - SARS-CoV-2 genome dataset (NCBI) dmel-all-aligned-r6.66.fasta.gz (2.31 GB) - Drosophila melanogaster genome (release 6.66, aligned) CHM13v2.0_genomic.fna.gz (1.08 GB) - Homo sapiens T2T-CHM13v2.0 complete genome hg19.chromFa.tar.gz (1.03 GB) - Homo sapiens genome assembly hg19 (chromosome FASTA files) mouse.fa.gz (939.27 MB) - Mus musculus genome assembly mm10 felCat9.fa.gz (879.37 MB) - Felis catus genome assembly felCat9 canFam6.fa.gz (821.81 MB) - Canis familiaris genome assembly canFam6 TGAC_WGS_durum_v1.fasta.gz (1.09 GB) - Triticum durum genome assembly TGAC_WGS_durum_v1 GCA_000002035.4_GRCz11_genomic.fna.gz (594.90 MB) - Danio rerio genome assembly GRCz11 VDB.fa.gz (55.43 MB) - NCBI RefSeq viral genome database CHM13v2.0_rna.fna.gz (205.24 MB) - Homo sapiens T2T-CHM13v2.0 transcript sequences