Results of application of HAPMIX to 13 populations from HGDP that are of African, Middle Eastern or European ancestry, using YRI and CEU as the reference populations.

We removed outlier samples from each population using PCA (by making plots like Figure 8, and removing samples that were outliers from the group). For samples with estimated European-related ancestry >0% and <100%, we also inferred the number of generations since mixture.