SM2ST

adata_STMGrpah_pyG1_bruker_ITO_glass_15-30um_c_new.h5ad The 15µm SM data was downsampled to 30µm via average pooling for the mouse cerebral hemisphere. adata_STMGrpah_pyG1_bruker_ITO_glass_15-30-15um_cluster.h5ad The original 15µm data was downsampled to 30µm via average pooling and subsequently upsampled back to 15µm using STMgraph for the mouse hemispheric SM data. mouse_brain_30um1.csv mouse_brain_30umo1.csv ShinyCardinal-preprocessed 30µm MSI data of the mouse cerebral hemisphere. mouse_brain_15um1.csv ShinyCardinal-preprocessed 15µm MSI data of the mouse cerebral hemisphere. mice_brain_SMres20_align.h5ad Alignment of the 20µm mouse brain MSI data with the H&E-stained section was achieved using SM2ST. Y7_T_adata_SMLED.h5ad Results of the Y7_T ccRCC data after SM2ST alignment and mapping. adata_STMGrpah_pyG1_ito_30um_mad_rex_h.h5ad The original 30µm data was upsampled to 15µm using STMgraph for the mouse hemispheric SM data. adata_STMGrpah_pyG1_bruker_ITO_glass_15-30-15um_interpolated_cluster.h5ad The original 15µm data was downsampled to 30µm via average pooling and subsequently upsampled back to 15µm using Linear interpolation for the mouse hemispheric SM data. adata_SMLED_SMres20_c1_wmse1.h5ad Spatial integration of 20µm-resolution mouse brain MSI data with ST spots was accomplished using SM2ST.