GSVC/A metagenomic catalogue of the global swine gut virome uncovers ecological principles governing phage-bacteria interactions
收藏Zenodo2026-06-11 更新2026-06-12 收录
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https://zenodo.org/doi/10.5281/zenodo.20579312
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资源简介：
This Zenodo deposit accompanies the Global Swine Virome Catalogue (GSVC) manuscript. It provides large files that are not hosted on GitHub, including:
(1) FINAL_all_projects_Count_matrix.zip — vOTU-by-sample read count matrix (CoverM) for 5,064 pig gut metagenomes;
(2) high_quality_viral.Final.fasta.gz and medium_quality_viral.Final.fasta.gz — representative vOTU genomes (high-quality: ≥90% complete; medium-quality: 50–90% complete);
(3) high_quality_Host_prediction_to_genome_m90.csv — iPHoP host predictions at genome level (medium confidence and above);
(4) CRISPR_MAGs_01–10.tar.gz — dereplicated bacterial metagenome-assembled genomes (MAGs) used for CRISPR spacer-based host–virus linking.
The GSVC comprises 224,605 vOTUs derived from 5,064 metagenomes across 25 countries and 82 locations. Analysis scripts and pre-processed summary tables are available at the companion GitHub repository.
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Zenodo创建时间：
2026-06-11
