Additional file 2: of Comparative genomics reveals the distinct evolutionary trajectories of the robust and complex coral lineages

Table S2. Sequencing libraries used for genome assembly and annotation. Table S3. Overview of genome assembly statistics for cnidarian genomes. Table S4 Mitochodrial genome identification and GC content. Table S5. De novo annotated repeat content data for various cnidarian genomes. Table S6. Comparison of gene model statistics amongst cnidarians. Table S7. Numbers of genes giving significant matches with proteins in the NR database. Table S8. Percentages of Core Eukaryotic Genes (CEGs) identified with CEGMA and BUSCO analyses for genome assembly and predicted transcripts. Table S9. Summary of SwissProt annotation data. Table S10. Summary of PFAM-A domain annotation data. Table S11. Distribution of genes assigned with KEGG K numbers. Table S12. Numbers of syntenic orthologous genes identified from selected species pairs. Table S13. Gene identifiers of HOX-related genes, other homeobox genes and linked genes. Table S14. Unique PFAM-A domains identified from coral versus anemone and complex versus robust coral comparisons. Table S15. Significantly expanded PFAM-A domains from coral versus anemone comparison. Table S16. Significantly expanded PFAM-A domains from complex versus robust coral comparison. Table S17. HSP20 domain containing genes in cnidarians. Table S18. Full list of genes involved in histidine biosynthesis identified in all species included in this study. Table S19. Conserved syntenic orthologs for histidine biosynthesis genes and their neighbouring genes amongst the eight cnidarians. Table S20. Sources of ATP phosphoribosyltransferase (K00765) data used for phylogeny construction. Table S21. Sources of Imidazoleglycerol-phosphate dehydratase (K01693, intronless) data used for phylogeny construction. Table S22. Histidine biosynthesis genes identified in additional anthozoan species. Table S23. Histidine biosynthesis genes identified in additional transcriptome data. Table S24. Identification of functional residues in putative histidine biosynthesis proteins from robust corals. (XLSX 120 kb)