1. Genome annotation file for Neixiu blood orange 2. Supplementary Tables 3. Supplementary Figures

1. Genome annotaton file for Neixiu Blood orange 2. Supplementary Tables are as follows: Supplementary Table 1. Genome estimatiion for Neixiu blood orange Supplementary Table 2. Statistics of assembled genome sequences for Neixiu blood orange Supplementary Table 3. Integrated function annotation of Neixiu blood genome Supplementary Table 4. Statistics of gene family clustering among Neixiu blood orange and other 11 representative plant species Supplementary Table 5. List of the expanded and constracted gene families 3. Supplementary Figures are as follows: Supplementary Figure 1. GO enrichment analysis for the specific genes of Neixiu blood orange Supplementary Figure 2. GO enrichment analysis for the contracted gene families of Neixiu blood orange Supplementary Figure 3. GO enrichment analysis for the expanded gene families of Neixiu blood orange Supplementary Figure 4. KEGG enrichment analysis for the contracted gene families of Neixiu blood orange Supplementary Figure 5. KEGG enrichment analysis for the expanded gene families of Neixiu blood orange Supplementary Figure 6. GO enrichment analysis for the SNPs between Neixiu blood orange and sweet orange Supplementary Figure 7. KEGG enrichment analysis for the SNPs between Neixiu blood orange and sweet orange Supplementary Figure 8. GO enrichment analysis for the InDels between Neixiu blood orange and sweet orange Supplementary Figure 9. KEGG enrichment analysis for the InDels between Neixiu blood orange and sweet orange Supplementary Figure 10. GO enrichment analysis for the SVs between Neixiu blood orange and sweet orange Supplementary Figure 11. KEGG enrichment analysis for the SVs between Neixiu blood orange and sweet orange Supplementary Figure 12. GO enrichment analysis for the Presence variations between Neixiu blood orange and sweet orange Supplementary Figure 13. KEGG enrichment analysis for the Presence variations between Neixiu blood orange and sweet orange Supplementary Figure 14. GO enrichment analysis for the Absence variations between Neixiu blood orange and sweet orange Supplementary Figure 15. KEGG enrichment analysis for the Absence variations between Neixiu blood orange and sweet orange Supplementary Figure 16. GO enrichment analysis for the CNVs between Neixiu blood orange and sweet orange Supplementary Figure 17. KEGG enrichment analysis for the CNVs between Neixiu blood orange and sweet orange