Supporting data for “Computational analysis of shotgun metagenomic data from human gut microbiota”.

This dataset contains raw source data and scripts written to generate figures for the thesis entitled "Supporting data for “Computational analysis of shotgun metagenomic data from human gut microbiota". This includes raw species abundance tables used for statistical analysis and methods evaluation, clinical patient records and blood/stool biochemical measurements. Files are separated by their chapter contribution. Chapter 2 files are related to methods comparison and evaluation in gut metagenomics species abundance estimation. Chapter 3 primarily contains raw patient clinical data and their gut microbial compositions for statistical analysis. Chapter 4 contains files related to the scripts utilized to investigate the phenomenon of read coverage bias in human gut metagenomic data.

本数据集汇集了生成论文《支持“计算分析人体肠道微生物群宏基因组数据的枪击法》图表所需的原始数据源与脚本。其中包含用于统计分析和方法评估的原始物种丰度表、临床患者记录以及血液/粪便生化指标测量数据。文件按照章节贡献进行分类。第二章文件与肠道宏基因组物种丰度估计中的方法比较与评估相关。第三章主要包含用于统计分析的原始患者临床数据和其肠道微生物组成。第四章包含用于研究人类肠道宏基因组数据中读取覆盖度偏差现象的脚本文件。