Additional file 2 of Traces of Introgression from cAus into Tropical Japonica Observed in African Upland Rice Varieties

Additional file 2. Table S1: The most significant biological process enrichments considered in this study. Retrieved from https://shinyapps.southgreen.fr/app_direct/goenrich/ . Table S2: 291 Tropical japonica accessions from both Africa and Asia. Table S3: Detailed analysis of the cAus introgression on chromosome 6, located between 17.9 and 21.7 Mb. Table S4: Tropical japonica accessions having Int1 (Int1a and Int1b) cAus introgression on chromosome 6 are listed below. Table S5: Results of Patterson’s D statistic using ABBA-BABA tests. Table S6: iHS genomic scan results on chromosome 6 of the West African tropical japonica population. Table S7: Tropical japonica, cAus, NERICA and glaberrima accessions groups used for TreeMix analysis. Table S8: Results of Patterson’s D, fd and fdM statistic using ABBA-BABA tests on chromosome 6. Table S9: 2710 accessions samples from Africa and Asia. This table was adapted from the additional data in the article Wang and al. 2018: https://www.nature.com/articles/s41586-018-0063-9 .