Neisseria core genome alignment and phylogeny
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https://figshare.com/articles/Neisseria_core_genome_alignment_and_phylogeny/5877486/1
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资源简介：
All publicly available genomes from the <i>Neisseria </i>genus were downloaded from NCBI (as of December 30, 2017) and annotated with Prokka v 1.12. <i>N. gonorrhoeae </i>and <i>N. meningitidis </i>were subsampled to 20 genomes. Core genes (n = 236) were identified and aligned with Roary v 3.12.0. Approximate maximum likelihood phylogenetic analysis was performed used FastTree v 2.1.9. The phylogeny was visualized using FigTree (http://tree.bio.ed.ac.uk/software/figtree/). Branches are scaled by substitutions per site.
提供机构：
figshare
创建时间：
2018-02-12
