Disentangling the influence of reservoir abundance and pathogen shedding on zoonotic spillover of the Leptospira agent in urban informal settlements

The following datasets were used to carry out the analyses in "Disentangling the influence of reservoir abundance and pathogen shedding on zoonotic spillover of the Leptospira agent in urban informal settlements". 

rat_abundance.csv - dataset for rat abundance model.

rat_shedding.csv - dataset for individual rat shedding model.

human_infections.csv - dataset for human infections (coordinates and valley removed for anonymity).

prediction_grid.csv - prediction dataset.

Codebook for repository data.pdf - codebook for the included datasets.