Additional file 6 of GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership
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Additional file 6: Table S7. Table giving detailed statistics about genes identified in the gene enrichment analysis for the Mouse Atlas kidney cells. All genes with log-Bayes factor > 17 are included in this table (here, we use the natural logarithm). Assuming (conservatively) that 1 out of the 22,142 tested genes is enriched, this Bayes factor corresponds to a posterior odds (PO) of $$\text {PO} = e^{17}/\text {22,142} \approx \text {1,000}$$ PO = e 17 / 22,142 ≈ 1,000 , or a posterior probability of about 0.999. Columns from left to right are: topic; gene symbol; Ensembl gene id; log-Bayes factor; average l.e. LFC from differentially accessible peaks connected to the gene (lfsr < 0.05).
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figshare
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2024-08-14



