Lventricosus_variant_calling

The recently published high-quality genome of <em>Lautoconus ventricosus</em> was used as a reference to map the raw sequencing data from all specimens with BWA, variant calling was performed with freebayes and filtering with VCFtools and vcffilter. This is the original output generated by freebayes, with instructions on how to quality filter it on my GitHub repository: https://github.com/saabalde/2023_Lventricosus_Species_Complex/tree/main/SNP_analyses