Datasets and codes for repeats annotation in genome
收藏Mendeley Data2018-05-23 更新2026-04-09 收录
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https://data.mendeley.com/datasets/k88h5xnhcb/1
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资源简介：
1) Files begin with 'all_retrovirus.' in 'report_run' are data we used to identify retrovirus (see detail in supplementary 1.5.3); 2) Files begin with 'GB_TE.new' in 'GBTE_data' are index files we used to identify reverse transcriptase and TE sequences from NCBI (see detail in supplementary 1.5.3); 3) 'report_run' are codes used to run reportsJ.pl (see detail in supplementary 1.5.3); 4) Files begin with 'sprot.' in 'report_run' are index files we used to identify proteins (see detail in supplementary 1.5.3); 5) 'Vertebrate_use.fa' is Vertebrate repeat consensus sequences downloaded from Repbase, we used it as CENSOR library (see detail in supplementary 1.5.1); 6) 'our_known_reps_20130520' was used in the first CENSOR run (see detail in supplementary 1.5.1). 7) 'RepBase20.04.fasta' used in last step of TE annotation, contains CENSOR TE references
创建时间：
2018-05-23
