microbetag : building a thorough database of genome-scale KO annotations
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Isolated genomes, SAGs and MAGs from GTDB, KEGG, MGnify and (if any) other resources, used to in the <em>microbetag </em>framework will be stored here as a dataset. Eventually, *microbetag* makes use of 2-column files for each genome, indicating the KO term found and a KEGG module in which this terms takes part into. As a single KO term might participates in more than one KEGG modules, the same KO might be more than once in an annotation file. For the case of GTDB, all representative genomes of GTDB (v.202) were parsed and their corresponding `.faa` files were retrieved from the NCBI FTP. Then the kofam_scan tool was used to annotate them and finally a manual script was used to keep KOs of each genome per module.
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Zenodo创建时间:
2022-04-01



