OrganChat: organ-organ communication through single cells

This Zenodo repository stores the OrganChatDB and the processed data to run the OrganChat tutorial, including: OrganChatDB (mouse): LSR_layer1_mouse.rda RSE_layer2_mouse.rda SET_layer3_mouse.rda OrganChatDB (human): LSR_layer1_human.rda RSE_layer2_human.rda SET_layer3_human.rda "Metabolite synonymous - HMDB ID” dictionary: hmdb_dictionary_20240129.csv METAFlux "nutrient_lookup_files": METAFlux_lookup_20240131.csv Processed data for benchmarking and perturbation-based validation: TumorMeta_Sun_2023.zip Processed insulin-resistance and aging-related mouse data: Insulin_UCI_2025_mouse.zip Processed mouse collagen-induced arthritis (CIA) data: Sandra_2023_mouse.zip Processed human atlas data of two donors: HumanAtlas_Science_2022.zip