Processed source data and analysis code for reproducible SGTA protein co-abundance analysis in lung adenocarcinoma

This research compendium contains analysis scripts, processed statistical outputs, figure-level source data, provenance records, audit files, and documentation supporting a multi-omic study of SGTA in lung adenocarcinoma. It supports paired transcript, paired proteome, tumour-context RNA–protein coupling, protein co-abundance network, patient-resolved single-cell boundary, and DepMap Public 26Q1 analyses. Version 1.1.0 implements 5,000 protein-label permutations over the complete confirmation network, 2,000 patient-level bootstrap replicates, and the conservative 180-protein subcluster terminology. No new primary patient or experimental data were generated. The MIT License applies to original analysis code in code/. CC BY 4.0 applies to study-generated processed tables, figure source data, figure previews, provenance records, audit files, and documentation. Neither licence relicenses provider-owned source data. Large third-party source matrices are not redistributed; their repository identifiers, versions, access dates, checksums, and processing provenance are documented.Administrative correction (28 July 2026): Outdated authorship metadata in legacy manuscript-building materials were corrected. This administrative correction does not affect the data, analyses, figures, results, or scientific conclusions.