Additional file 1: of Imputation from SNP chip to sequence: a case study in a Chinese indigenous chicken population

Table S1. A pedigree-based genetic relationship matrix among the 24 key individuals. Table S2 A summary of the sequencing and assembly of 24 key individuals. Table S3 Number of identified variants in the chicken genome with GATK. Table S4 The results of the SNP calling for chromosomes (chr1, chr3, chr6, and chr28) with different sequencing depth under the different total cost of genotyping, respectively. (XLSX 25 kb)